PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00041.1.g00110.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 297aa    MW: 32228.9 Da    PI: 5.1285
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00041.1.g00110.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.32.2e-19105154255
                             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                     +y+GVr+++ +g+W+AeIrdp+    r  r++lg+f ta+ Aa+a++aa+++l+g
  Zpz_sc00041.1.g00110.1.sm.mkhc 105 RYRGVRQRP-WGKWAAEIRDPV----RgVRVWLGTFSTADSAARAYDAAARRLRG 154
                                     7********.**********63....56*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.9E-13105154IPR001471AP2/ERF domain
SuperFamilySSF541714.51E-22105163IPR016177DNA-binding domain
PROSITE profilePS5103224.684105162IPR001471AP2/ERF domain
CDDcd000185.08E-17105161No hitNo description
SMARTSM003801.1E-37105168IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.7E-32105164IPR001471AP2/ERF domain
PRINTSPR003674.0E-11106117IPR001471AP2/ERF domain
PRINTSPR003674.0E-11128144IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MCGGAIIADL IPERSRCSRQ PSHPALPSKK RSWRDHDADI VDIDDFEAAF EEFEGDSDEE  60
AVVHVDDDEE SELTLLAPLG RKPLSPLFPR GARRAKDAMR PGARRYRGVR QRPWGKWAAE  120
IRDPVRGVRV WLGTFSTADS AARAYDAAAR RLRGTKAKLN FPSSSSPPRR KRRRDNAGTC  180
TSSPSTKTDV PAFVPAVDYG ATAAVFGENL SSQKLADEGD PALLLPSLAG AAASWSAGDS  240
EVVDPPYDFS GEIMTSCFAL TGCEYKSLET LFSGETAVEE HGLMGPWSFG EGGSFIF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-21104162463ATERF1
3gcc_A4e-21104162463ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1169173RKRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014499115.12e-38PREDICTED: ethylene-responsive transcription factor RAP2-12
TrEMBLA0A0L9TET93e-38A0A0L9TET9_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RIN33e-38A0A0S3RIN3_PHAAN; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151951415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.19e-20ERF family protein